[OPEN-KO] Microbiome Analysis Guide Book
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  • Microbiome analysis user guide book
  • I. INTRODUCTION
    • 1. Prologue
    • 2. Report & Raw data Download
    • 3. Analysis Report Template
  • II. PROJECT INFORMATION
    • 1. Project Information
  • III. NGS SEQUENCING
    • 1. NGS Statistics
  • IV. TAXONOMY ANALYSIS
    • 1. Taxonomy Summary
    • 2. Krona Chart
  • V. DIVERSITY ANALYSIS
    • 1. α-Diversity
      • Additional Information
    • 2. β-Diversity
    • 3. LEfSe
    • 4. Heatmap
  • Ⅵ. FUNCTIONAL ANALYSIS
    • 1. Functional Profile
      • KEGG page
  • Ⅶ. ADDITIONAL ANALYSIS
    • 1. Phylogenetic tree with Statistics
  • + REFERENCE
    • 1. Reference
    • 2. Database Version
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1. Reference

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Last updated 6 months ago

Reference

마이크로바이옴 분석에서 활용한 Database, Method, Statistics 등의 모든 참조 논문을 제공합니다. Reference page 내 관련 Reference 상세 내용을 확인 가능합니다.

Databases

- NCBI

- Greengene

- SILVA

- Patric

- eHOMD

- Zymo

Microbiome Analysis

- 16S-rRNA Analysis

- Pre-processing & Feature clustering

- Database

Taxonomy Analysis

- Taxonomy assignment

- Krona Chart

- Phylogenetic tree

Diversity Analysis

- Alpha Diversity

- Beta Diversity

- LefSe Analysis

- Heatmap

Functional Analysis

- Functional Prediction

Additional Analysis

- Phylogenetic tree with Statistics

- Statistics